Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs75537694 chr2:118531587 G/A 1.79E-5 177 25.17 25.75 11.65 KM Plot
PCPG rs75566647 chr21:38445968 C/T 1.19E-8 174 25 25.87 3.83 KM Plot
PCPG rs75570346 chr16:90048080 G/C 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs75589685 chr2:121543257 G/T 0.000214 177 25.53 24.37 59.77 KM Plot
PCPG rs7559497 chr2:118518819 A/G 1.48E-5 178 24.85 28.8 11.65 KM Plot
PCPG rs75598973 chr12:56746558 C/T 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs7561484 chr2:107207725 A/G 0.000219 177 26.57 23.53 25.87 KM Plot
PCPG rs75616938 chr17:1424837 G/A 1.25E-5 177 24.7 26.73 13.02 KM Plot
PCPG rs75620045 chr2:118704883 T/A 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs7564507 chr2:61495193 G/A 8.37E-5 174 23.43 31.48 10.3 KM Plot
PCPG rs75654641 chr5:179486021 C/T 1.41E-5 175 24.37 32.15 25.17 KM Plot
PCPG rs75659293 chr17:1461195 G/C 1.47E-5 175 24.53 25.87 25.17 KM Plot
PCPG rs7566358 chr2:107254241 A/G 0.000336 172 26.57 21.95 25.87 KM Plot
PCPG rs7567487 chr2:24319352 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs7567612 chr2:118530096 C/G 0 178 24.85 30.93 3.17 KM Plot